PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G075000.1
Common NameB456_005G075000, LOC105796994
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 493aa    MW: 54788.4 Da    PI: 6.5339
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G075000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.1e-07250271223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Gorai.005G075000.1 250 FCTICGKGFKRDANLRMHMRGH 271
                         6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.14E-5247274No hitNo description
SMARTSM003550.0026249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03249276IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-6250300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
SMARTSM0035561298331IPR015880Zinc finger, C2H2-like
SMARTSM0035539336358IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDHRDRQSIE HQKKDPQQHP HPCFTNFTTH HQQQKWEDPS LLDYSTRIEP PFQAFNPNCQ  60
TKSSFPCNPN NQIKVPDPLM NELLQASKVQ DWDPSAMLNN LSFLEQKIHQ LQGLVHSIIG  120
RGGQVLGQPD ELVDQQQQLI TAALTSIIVQ LISTAGSLLP SVKHHTLCGA PPVASLAQFQ  180
PQNGGGNSVP ELPNTVDVSS NSGEQQNHVM EEHEMKDEED AEELGESLFP GTYEILQLEK  240
EEILAPHTHF CTICGKGFKR DANLRMHMRG HGDEYKTPAA LAKPNKESSS EPALIKRYSC  300
PFAGCKRNKD HKKFQPLKTI LCVKNHYKRS HCDKSYICSR CHTKKFSVIA DLKTHEKHCG  360
KDKWLCSCGT TFSRKDKLFG HIALFQGHTP AIPLDETKGP IAPSDPGDGS EATNVVGSMN  420
FFNFGSENGV DVKGSLDDPA AYFSPLNFET CNFGGFHEFP RPASDDSETS LAFLLSGTCS  480
YNNNNNNDVE RS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5271631e-159HQ527163.1 Gossypium herbaceum clone NBRI_D2_2116 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012482345.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLA0A0D2SCC10.0A0A0D2SCC1_G
STRINGVIT_18s0072g00840.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69772644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.20.0C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]